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accession-icon GSE16648
Networking of differentially expressed genes in human cancer cell lines resistant to methotrexate
  • organism-icon Homo sapiens
  • sample-icon 37 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Networking of differentially expressed genes in human cancer cells resistant to methotrexate.

Sample Metadata Fields

Specimen part, Cell line

View Samples
accession-icon GSE16085
Networking of differentially expressed genes in human K562 erythtoblastic leukemia cells resistant to methotrexate
  • organism-icon Homo sapiens
  • sample-icon 5 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

A summary of the work associated to these microarrays is the following:

Publication Title

Networking of differentially expressed genes in human cancer cells resistant to methotrexate.

Sample Metadata Fields

Specimen part, Cell line

View Samples
accession-icon GSE16070
Networking of differentially expressed genes in human MCF7 breast cancer cells resistant to methotrexate
  • organism-icon Homo sapiens
  • sample-icon 6 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

A summary of the work associated to these microarrays is the following:

Publication Title

Networking of differentially expressed genes in human cancer cells resistant to methotrexate.

Sample Metadata Fields

Specimen part, Cell line

View Samples
accession-icon GSE16066
Networking of differentially expressed genes in CaCo2 human colon cancer cells resistant to methotrexate
  • organism-icon Homo sapiens
  • sample-icon 5 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

A summary of the work associated to these microarrays is the following:

Publication Title

Networking of differentially expressed genes in human cancer cells resistant to methotrexate.

Sample Metadata Fields

Specimen part, Cell line

View Samples
accession-icon GSE16082
Networking of differentially expressed genes in human MIA PaCa2 pancreatic cancer cells resistant to methotrexate
  • organism-icon Homo sapiens
  • sample-icon 6 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

A summary of the work associated to these microarrays is the following:

Publication Title

Networking of differentially expressed genes in human cancer cells resistant to methotrexate.

Sample Metadata Fields

Specimen part, Cell line

View Samples
accession-icon GSE16080
Networking of differentially expressed genes in human MDA-MB-468 breast cancer cells resistant to methotrexate
  • organism-icon Homo sapiens
  • sample-icon 5 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

A summary of the work associated to these microarrays is the following:

Publication Title

Networking of differentially expressed genes in human cancer cells resistant to methotrexate.

Sample Metadata Fields

Specimen part, Cell line

View Samples
accession-icon GSE16089
Networking of differentially expressed genes in human Saos-2 osteosarcoma cells resistant to methotrexate
  • organism-icon Homo sapiens
  • sample-icon 5 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

A summary of the work associated to these microarrays is the following:

Publication Title

Networking of differentially expressed genes in human cancer cells resistant to methotrexate.

Sample Metadata Fields

Specimen part, Cell line

View Samples
accession-icon GSE51869
Expression data from mesenchymal stromal cells isolated from the umbilical cord tissue (UCX) and cultivated in ATMP-compatible media
  • organism-icon Homo sapiens
  • sample-icon 10 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

Standardization of MSC manufacturing is urgently needed to facilitate comparison of clinical trial results. Here, we compare gene expression of MSC generated by the adaptation of a proprietary method for isolation and cultivation of a specific umbilical cord tissue-derived population of Mesenchymal Stromal Cells (MSCs)

Publication Title

Towards an advanced therapy medicinal product based on mesenchymal stromal cells isolated from the umbilical cord tissue: quality and safety data.

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon SRP068927
Transcriptome comparison of LUBEL catalytic dead mutants to their parental line
  • organism-icon Drosophila melanogaster
  • sample-icon 24 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 2500

Description

Effect of LUBEL catalytic dead mutation in immune response Overall design: Mutation was introduced in the LUBEL catalytic region by CRISPR/Cas9 techonology in Drosophila melanogaster and their transcriptome was compared in control (sample 23930 to 23941) and e.coli pricked samples (sample 28984 to 28995).

Publication Title

Linear ubiquitination by LUBEL has a role in Drosophila heat stress response.

Sample Metadata Fields

Sex, Specimen part, Subject

View Samples
accession-icon SRP077570
Transcriptome comparison of LUBEL catalytic dead mutant to its parental line
  • organism-icon Drosophila melanogaster
  • sample-icon 12 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 2500

Description

Effect of LUBEL catalytic dead mutation upon Heastshock Overall design: Mutation was introduced in CG11321 catalytic region by CRISPR/Cas9 techonology in Drosophila melanogaster and transcriptome was compared in untreated and heatshocked samples

Publication Title

Linear ubiquitination by LUBEL has a role in Drosophila heat stress response.

Sample Metadata Fields

Treatment, Subject

View Samples
...

refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

fund-icon Fund the CCDL

Developed by the Childhood Cancer Data Lab

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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