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accession-icon GSE71121
Expression data (micro-array and RNA-seq, frozen tumors and FFPE blocks) from various sarcomas
  • organism-icon Homo sapiens
  • sample-icon 259 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

RNA sequencing validation of the Complexity INdex in SARComas prognostic signature.

Sample Metadata Fields

Time

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accession-icon GSE71118
Expression data (micro-array, frozen tumors) from various sarcomas
  • organism-icon Homo sapiens
  • sample-icon 259 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

We validated the technological and material transfers of the CINSARC signature.

Publication Title

RNA sequencing validation of the Complexity INdex in SARComas prognostic signature.

Sample Metadata Fields

Time

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accession-icon GSE66717
Hepatocyte-specific knockout of Pten and of Pten and Tgfbr2 in mice
  • organism-icon Mus musculus
  • sample-icon 11 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Gene 1.0 ST Array (mogene10st)

Description

Gene expression of hepatocyt-specific knockout of Pten and of Pten and Tgfbr2 in mice

Publication Title

Epithelial Transforming Growth Factor-β Signaling Does Not Contribute to Liver Fibrosis but Protects Mice From Cholangiocarcinoma.

Sample Metadata Fields

Sex, Specimen part

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accession-icon GSE38648
Deactivation of Hepatic Stellate Cells during Liver Fibrosis Resolution in Mice
  • organism-icon Mus musculus
  • sample-icon 8 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Gene 1.0 ST Array (mogene10st)

Description

Gene expression of mouse hepatic stellate cells was characterized under the following conditions:

Publication Title

Deactivation of hepatic stellate cells during liver fibrosis resolution in mice.

Sample Metadata Fields

Sex, Specimen part

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accession-icon GSE34640
Gene expression changes in hepatic stellate cells in response to fibrogenic agents.
  • organism-icon Mus musculus
  • sample-icon 17 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Genome 430 2.0 Array (mouse4302)

Description

Gene expression of hepatic stellate cells exposed to fetal bovine serum (FBS)

Publication Title

Hepatic macrophages but not dendritic cells contribute to liver fibrosis by promoting the survival of activated hepatic stellate cells in mice.

Sample Metadata Fields

Sex, Specimen part

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accession-icon GSE49824
High Mobility Group Box Protein 1 is Dispensable for Autophagy and Mitochondrial Quality Control in Vivo
  • organism-icon Mus musculus
  • sample-icon 8 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Gene 1.0 ST Array (mogene10st)

Description

Gene expression of livers with hepatocyte-specific deletion of Hmgb1 was compared to control livers with floxed Hmgb1

Publication Title

High-mobility group box 1 is dispensable for autophagy, mitochondrial quality control, and organ function in vivo.

Sample Metadata Fields

Sex, Specimen part

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accession-icon GSE33446
Gene expression accompanying the promotion of hepatocellular carcinoma by intestinal microbiota and Tlr4 in mice.
  • organism-icon Mus musculus
  • sample-icon 18 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Genome 430 2.0 Array (mouse4302)

Description

The effect of Tlr4P712H mutation (rendering TLR4 non-functional), or gut-sterilization by antbiotics, on the induction of tumorgenesis by CCl4 and diethylnitrosamine (DEN) was characterized. Affymetrix Mouse 430 2.0 gene expression measurements were used to characterize the transcriptomic basis of the effects of the above treatments and genotypes on tumorgenesis.

Publication Title

Promotion of hepatocellular carcinoma by the intestinal microbiota and TLR4.

Sample Metadata Fields

Sex, Age, Specimen part

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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Developed by the Childhood Cancer Data Lab

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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