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accession-icon GSE32316
FGFR1 target genes in brown adipose tissues
  • organism-icon Mus musculus
  • sample-icon 12 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Genome 430 2.0 Array (mouse4302)

Description

We aimed to identify genes that are regulated by FGFR1 in brown adipose tissues of adult male ob/ob mice by injecting 1 mg/kg anti-FGFR1 agonistic antibody.

Publication Title

Amelioration of type 2 diabetes by antibody-mediated activation of fibroblast growth factor receptor 1.

Sample Metadata Fields

Sex, Age, Specimen part

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accession-icon GSE27316
Effects of long dsRNA expression in HeLa and HEK293 cells
  • organism-icon Homo sapiens
  • sample-icon 8 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

Double-stranded RNA (dsRNA) can enter different pathways in mammalian cells, including sequence-specific RNA interference, sequence-independent interferon response and editing by adenosine deaminases. To assess the potential of expressed dsRNA to induce interferon stimulated genes in somatic cells, we performed microarray analysis of HEK293 and HeLa cells transfected with a MosIR plasmid expressing an mRNA with a long inverted repeat structure in its 3UTR (MosIR) or with a parental MosIR plasmid (without inverted repeat) as a control.

Publication Title

dsRNA expression in the mouse elicits RNAi in oocytes and low adenosine deamination in somatic cells.

Sample Metadata Fields

Specimen part

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accession-icon GSE48239
Expression profiling of luminal and glandular epithelia in the neonatal and adult mouse uterus
  • organism-icon Mus musculus
  • sample-icon 8 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Gene 1.0 ST Array (mogene10st)

Description

Laser capture microdissection coupled with microarray genes expression analysis were utilized in order to elucidate the regulatory networks active in epithelial cells of the neonatal and adult mouse uterus.

Publication Title

Cell-specific transcriptional profiling reveals candidate mechanisms regulating development and function of uterine epithelia in mice.

Sample Metadata Fields

Specimen part

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accession-icon GSE48340
Expression profiling of the uteri of progesterone induced uterine gland knockout mice
  • organism-icon Mus musculus
  • sample-icon 8 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Gene 1.0 ST Array (mogene10st)

Description

To identify genes differentially expressed in the glandless uterus, whole uteri were collected from control (uterine glands present) and PUGKO (no uterine glands) mice at day of pseudopregnancy (DOPP) 3.5 (day DOPP 0.5= vaginal plug). Microarray analysis identified differentially expressed genes in the glandless uteri of PUGKO mice as compared to control mice.

Publication Title

Cell-specific transcriptional profiling reveals candidate mechanisms regulating development and function of uterine epithelia in mice.

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE48339
Identification of candidate FOXA2-regulated genes in the adult mouse uterus
  • organism-icon Mus musculus
  • sample-icon 8 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Gene 1.0 ST Array (mogene10st)

Description

To identify candidate genes regulated by forkhead transcription factor box A2 (FOXA2) in the uterus, control and Foxa2-deleted uteri were collected at day of pseudopregnancy (DOPP) 3.5 (DOPP 0.5= vaginal plug). Microarray analysis identified differentially expressed genes in the Foxa2-deleted as compared to control uteri that are candidiate FOXA2-regulated genes in the uterus.

Publication Title

Integrated chromatin immunoprecipitation sequencing and microarray analysis identifies FOXA2 target genes in the glands of the mouse uterus.

Sample Metadata Fields

Specimen part

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accession-icon GSE86547
The histone demethylase KDM3A regulates the transcriptional program of the androgen receptor in prostate cancer cells
  • organism-icon Homo sapiens
  • sample-icon 1 Downloadable Sample
  • Technology Badge Icon Affymetrix Human Gene 2.0 ST Array (hugene20st)

Description

To identify the genes regulated by androgen receptor (AR), we performed the profiling array analysis on the CWR22Rv1 cells and determined the differentially expressed genes upon the knockdown of AR.

Publication Title

The histone demethylase KDM3A regulates the transcriptional program of the androgen receptor in prostate cancer cells.

Sample Metadata Fields

Cell line

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accession-icon GSE37714
Mammalian TRIM71 as repressor of mRNAs that inhibits translation and affects mRNA stability
  • organism-icon Mus musculus, Homo sapiens
  • sample-icon 12 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Gene 1.0 ST Array (hugene10st)

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

The mammalian TRIM-NHL protein TRIM71/LIN-41 is a repressor of mRNA function.

Sample Metadata Fields

Specimen part, Cell line

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accession-icon GSE37713
Expression data from HEK293 Flp-In cells constitutivly expressing FLAG-HA-tagged TRIM71 and that of the parental cell line
  • organism-icon Homo sapiens
  • sample-icon 6 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Gene 1.0 ST Array (hugene10st)

Description

We identify mammalian TRIM71 as repressor of mRNAs that inhibits translation and affects mRNA stability.

Publication Title

The mammalian TRIM-NHL protein TRIM71/LIN-41 is a repressor of mRNA function.

Sample Metadata Fields

Cell line

View Samples
accession-icon GSE37712
Expression data from mouse embryonic stem cells upon TRIM71 KD and parental ctrl cells
  • organism-icon Mus musculus
  • sample-icon 6 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Gene 1.0 ST Array (hugene10st)

Description

We identify mammalian TRIM71 as repressor of mRNAs that inhibits translation and affects mRNA stability. In this data set we compare the expression profile of mouse ES upon Trim71 KD versus that of the parental cells.

Publication Title

The mammalian TRIM-NHL protein TRIM71/LIN-41 is a repressor of mRNA function.

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE8166
Transcriptome Profile of the Vascular Endothelial Cell Response to Candida albicans
  • organism-icon Homo sapiens
  • sample-icon 20 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133A Array (hgu133a)

Description

We perform microarray analysis of HUVECs upon stimulation with virulent wildtype C. albicans strain SC5314 or its efg1/efg1 cph1/cph1 hyphal-deficient derivative strain CAN34 to compare the gene expression profiles elicited from HUVECs in response to these strains. In addition, these responses are compared to that of TNF-alpha induced responses to determine which responses are Candida-specific.

Publication Title

Transcriptome profile of the vascular endothelial cell response to Candida albicans.

Sample Metadata Fields

No sample metadata fields

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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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