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accession-icon GSE87164
Gene expression in MMTV-PyMT whole tumor, CD3+ lymphocytes or CD11b+ myeloid cells with and without Class IIa HDAC inhibitor treatment
  • organism-icon Mus musculus
  • sample-icon 19 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Gene 1.0 ST Array (mogene10st)

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Class IIa HDAC inhibition reduces breast tumours and metastases through anti-tumour macrophages.

Sample Metadata Fields

Sex, Specimen part

View Samples
accession-icon GSE76659
Differential gene expression in either CD3+ lymphocytes or CD11b+ myeloid cells due to Class IIa HDAC inhibitor treatment
  • organism-icon Mus musculus
  • sample-icon 13 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Gene 1.0 ST Array (mogene10st)

Description

The aim of this study was to identify differential gene expression resulting from the inhibition of class IIa HDACs in the CD3+ or CD11b+ cells residing in MMTV-PyMT tumors.

Publication Title

Class IIa HDAC inhibition reduces breast tumours and metastases through anti-tumour macrophages.

Sample Metadata Fields

Sex, Specimen part

View Samples
accession-icon GSE87163
MMTV-PyMT whole tumor gene expression with and without Class IIa HDAC inhibitor treatment
  • organism-icon Mus musculus
  • sample-icon 6 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Gene 1.0 ST Array (mogene10st)

Description

The aim of this study was to identify differential gene expression resulting from the inhibition of class IIa HDACs in the CD3+ or CD11b+ cells residing in MMTV-PyMT tumors.

Publication Title

Class IIa HDAC inhibition reduces breast tumours and metastases through anti-tumour macrophages.

Sample Metadata Fields

Sex, Specimen part

View Samples
accession-icon GSE55307
Gene profiling in CBA and BL/6 bone marrow derived dendritic cells (BMDC)
  • organism-icon Mus musculus
  • sample-icon 2 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Gene 1.0 ST Array (mogene10st)

Description

Analysis of baseline gene expression in bone marrow derived dendritic cells (BMDC) from female CBA/J (CBA) and C57BL/6 (BL/6) mice. Results provide insight into strain-dependent differences in gene expression.

Publication Title

CD209a expression on dendritic cells is critical for the development of pathogenic Th17 cell responses in murine schistosomiasis.

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE32112
Gene expression data from muscle sample of pig commercial herd Pix(DLxDE).
  • organism-icon Sus scrofa
  • sample-icon 206 Downloadable Samples
  • Technology Badge Icon Affymetrix Porcine Genome Array (porcine)

Description

In this study, we used correlation analysis of the expression profiles and carcass traits to produce a list of functional candidate genes under the assumption that genes with strong correlation between their expression values and drip belong to pathways or networks relevant for the control of the trait.

Publication Title

Elucidating molecular networks that either affect or respond to plasma cortisol concentration in target tissues of liver and muscle.

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE29340
Microarray analysis reveals genes and functional networks relevant to the predisposition for inverted teats in pigs
  • organism-icon Sus scrofa
  • sample-icon 29 Downloadable Samples
  • Technology Badge Icon Affymetrix Porcine Genome Array (porcine)

Description

The inverted teat defect is an inherited disorder characterised by the failure of teats to protrude from the udder surface. The number and identity of relevant genes are unknown.

Publication Title

Microarray analysis reveals genes and functional networks relevant to the predisposition to inverted teats in pigs.

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE32956
Global transcriptome analysis of mammary tissue during fetal bud formation and growth in two pig breeds
  • organism-icon Sus scrofa
  • sample-icon 14 Downloadable Samples
  • Technology Badge Icon Affymetrix Porcine Genome Array (porcine)

Description

The mammary gland development in swine begins at embryogenesis. The number and identity of relevant genes are unknown.

Publication Title

Gene expression analysis of mammary tissue during fetal bud formation and growth in two pig breeds--indications of prenatal initiation of postnatal phenotypic differences.

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE25445
Gene expression data from liver sample of pig commercial herd Pix(DLxDE).
  • organism-icon Sus scrofa
  • sample-icon 150 Downloadable Samples
  • Technology Badge Icon Affymetrix Porcine Genome Array (porcine)

Description

In this study, we used correlation analysis of the expression profiles and carcass traits to produce a list of functional candidate genes under the assumption that genes with strong correlation between their expression values and drip belong to pathways or networks relevant for the control of the trait.

Publication Title

Integrating expression profiling and whole-genome association for dissection of fat traits in a porcine model.

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE25484
Fetal programming of hepatic transcriptome in response to gestational dietary protein levels in the pig
  • organism-icon Sus scrofa
  • sample-icon 121 Downloadable Samples
  • Technology Badge Icon Affymetrix Porcine Genome Array (porcine)

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

A high protein diet during pregnancy affects hepatic gene expression of energy sensing pathways along ontogenesis in a porcine model.

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE33740
Fetal programming of muscle transcriptome in response to gestational dietary protein levels in the pig
  • organism-icon Sus scrofa
  • sample-icon 67 Downloadable Samples
  • Technology Badge Icon Affymetrix Porcine Genome Array (porcine)

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Transcriptional response of skeletal muscle to a low-protein gestation diet in porcine offspring accumulates in growth- and cell cycle-regulating pathways.

Sample Metadata Fields

Specimen part

View Samples
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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Developed by the Childhood Cancer Data Lab

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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