refine.bio
  • Search
      • Normalized Compendia
      • RNA-seq Sample Compendia
  • Docs
  • About
  • My Dataset
    0
github link
Build and Download Custom Datasets
refine.bio helps you build ready-to-use datasets with normalized transcriptome data from all of the world’s genetic databases.
Showing 4 of 4 results
Sort by

Filters

Technology

Platform

accession-icon GSE47420
Analysis of the effects of Bmx deficiency on Angiotensin II -induced cardiac hypertrophy
  • organism-icon Mus musculus
  • sample-icon 24 Downloadable Samples
  • Technology Badge IconIllumina MouseWG-6 v2.0 expression beadchip

Description

We show that Bmx-deficiency reduces angiotensin II -induced cardiac hypertrophy and pathological gene expression

Publication Title

Endothelial Bmx tyrosine kinase activity is essential for myocardial hypertrophy and remodeling.

Sample Metadata Fields

Sex

View Samples
accession-icon GSE38457
VEGF-B in rat hearts
  • organism-icon Rattus norvegicus
  • sample-icon 12 Downloadable Samples
  • Technology Badge IconIllumina ratRef-12 v1.0 expression beadchip

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

VEGF-B-induced vascular growth leads to metabolic reprogramming and ischemia resistance in the heart.

Sample Metadata Fields

Sex, Age, Specimen part

View Samples
accession-icon GSE38454
Analysis of the global gene expression in VEGF-B transgenic rat hearts
  • organism-icon Rattus norvegicus
  • sample-icon 12 Downloadable Samples
  • Technology Badge IconIllumina ratRef-12 v1.0 expression beadchip

Description

We show that an excess of VEGF-B protects the heart via adaptive cardiac hypertrophy and increased coronary arterial reserve, and by inducing a shift from lipid to glucose metabolism.

Publication Title

VEGF-B-induced vascular growth leads to metabolic reprogramming and ischemia resistance in the heart.

Sample Metadata Fields

Sex, Age, Specimen part

View Samples
accession-icon SRP108034
Single cell RNA-seq of mouse brain astrocyte transcriptomes
  • organism-icon Mus musculus
  • sample-icon 250 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 2000

Description

By analyzing 250 astrocyte single cell transcriptomes from adult brain, we provide gene expresssion profile of brain astrocyte Overall design: We chose adult mice about 3 months old and analysed single cells in the brain. We chose a methodology based on fluorescence-activated cell sorting (FACS) into 384-well plates followed by the SmartSeq2 methodology.

Publication Title

Single-cell RNA sequencing of mouse brain and lung vascular and vessel-associated cell types.

Sample Metadata Fields

Specimen part, Cell line, Subject

View Samples
Didn't see a related experiment?

refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

fund-icon Fund the CCDL

Developed by the Childhood Cancer Data Lab

Powered by Alex's Lemonade Stand Foundation

Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

BSD 3-Clause LicensePrivacyTerms of UseContact