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accession-icon GSE145781
Whole spleen transcriptome during acute phase of infection in a virulent Plasmodium chabaudi chabaudi CB infection
  • organism-icon Mus musculus
  • sample-icon 32 Downloadable Samples
  • Technology Badge IconIllumina MouseWG-6 v2.0 expression beadchip

Description

Analysis of spleen samples taken throughout the acute phase of infection from mice infected with virulent P. chabaudi CB strain

Publication Title

Transcriptome analysis of blood and spleen in virulent and avirulent mouse malaria infection.

Sample Metadata Fields

Sex, Specimen part, Time

View Samples
accession-icon GSE145634
Rodent malaria parasite RNA does not affect mouse BeadChip results
  • organism-icon Mus musculus, Plasmodium chabaudi
  • sample-icon 8 Downloadable Samples
  • Technology Badge IconIllumina MouseWG-6 v2.0 expression beadchip

Description

Rodent malaria parasite RNA hybridized on Illumina Mouse WG-6 v2.0 Expression BeadChip

Publication Title

Transcriptome analysis of blood and spleen in virulent and avirulent mouse malaria infection.

Sample Metadata Fields

Sex, Specimen part

View Samples
accession-icon GSE29901
Retinal whole genome microarray analysis after irradiated injury of intraorbital nerve in the monkey
  • organism-icon Macaca mulatta
  • sample-icon 6 Downloadable Samples
  • Technology Badge Icon Affymetrix Rhesus Macaque Genome Array (rhesus)

Description

To obtain and analyze early retinal changes at molecular level at 24h after ipsilateral intraorbital nerve radiation injury by gamma knife surgery

Publication Title

Retinal whole genome microarray analysis and early morphological changes in the optic nerves of monkeys after an intraorbital nerve irradiated injury.

Sample Metadata Fields

Specimen part, Treatment

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accession-icon GSE119143
Expression data of lncRNAs and mRNAs extracted from PBMCs of tuberculosis patients and healthy individuals[HTA2.0]
  • organism-icon Homo sapiens
  • sample-icon 12 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Transcriptome Array 2.0 (hta20)

Description

Tuberculosis (TB) is the ninth leading cause of death worldwide and the leading cause from a single infectious agent, ranking above HIV/AIDS.Although considerable advances have been achieved in recent years, the genetic and molecular mechanisms underlying this disease remain largely unclear.

Publication Title

No associated publication

Sample Metadata Fields

Specimen part, Disease stage

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accession-icon GSE84609
Effect of GDF11 on RANKL-induced osteoclastogenesis
  • organism-icon Mus musculus
  • sample-icon 6 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Gene 1.0 ST Array (mogene10st)

Description

GDF11 treatment leads to bone loss in mice and strongly stimulates RANKL-induced osteoclastogenesis of bone marrowderived macrophages (BMMs) in vitro.

Publication Title

GDF11 decreases bone mass by stimulating osteoclastogenesis and inhibiting osteoblast differentiation.

Sample Metadata Fields

Specimen part, Treatment

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accession-icon SRP152744
Homo sapiens Transcriptome or Gene expression
  • organism-icon Homo sapiens
  • sample-icon 12 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 4000

Description

RNA-sequencings of TSPY1-overexpressed A549 and HepG2 cells were performed to systematically explore the signaling pathways in which TSPY1 is involved during tumor progression.

Publication Title

No associated publication

Sample Metadata Fields

Sex, Age, Specimen part, Cell line, Treatment

View Samples
accession-icon GSE101879
KK-Ay mice gene expression profile
  • organism-icon Mus musculus
  • sample-icon 12 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Gene 1.0 ST Array (mogene10st)

Description

Mouse gene express was using Mouse Gene 1.0 ST Array.

Publication Title

No associated publication

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE87359
Expression data from kidney in type 2 diabetic db/db mice
  • organism-icon Mus musculus
  • sample-icon 6 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Gene 2.0 ST Array (mogene20st)

Description

Diabetic nephropathy(DN) is a common diabetic microvascular complication, the underlying mechanisms involved in DN remain to be elucidated.

Publication Title

Transcriptional Profile of Kidney from Type 2 Diabetic db/db Mice.

Sample Metadata Fields

Sex, Age, Specimen part

View Samples
accession-icon GSE73954
Expression data from human cell line infected by human cytomegalovirus with over-expression lncRNA
  • organism-icon Homo sapiens
  • sample-icon 6 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

RNA2.7 is a long non-coding RNA encoded by HCMV, which has be reported related with apoptosis. We have found RNA2.7 can also affect virus replication.

Publication Title

No associated publication

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon GSE87121
Sorafenib resistance associated gene expression in renal cell carcinoma
  • organism-icon Homo sapiens
  • sample-icon 10 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Exon 1.0 ST Array [transcript (gene) version (huex10st)

Description

To identify deregulated lncRNAs responsible for sorafenib unresponsiveness,

Publication Title

No associated publication

Sample Metadata Fields

Specimen part

View Samples
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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

fund-icon Fund the CCDL

Developed by the Childhood Cancer Data Lab

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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